CVE-2026-31973 (GCVE-0-2026-31973)

Vulnerability from cvelistv5 – Published: 2026-03-18 20:34 – Updated: 2026-03-19 16:14
VLAI
Title
NULL pointer dereference in samtools cram-size
Summary
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
SSVC
Exploitation: none Automatable: no Technical Impact: partial
CISA Coordinator · CISA-ADP (v2.0.3)
Decision recorded 2026-03-19 16:14 UTC
CWE
  • CWE-476 - NULL Pointer Dereference
Impacted products
Vendor Product Version CPE status
samtools samtools Affected: >= 1.17, < 1.21.1
Affected: >= 1.22, < 1.22.2
Affected: = 1.23
guessed Create a notification for this product.
Show details on NVD website

{
  "containers": {
    "adp": [
      {
        "providerMetadata": {
          "dateUpdated": "2026-03-18T23:08:20.721Z",
          "orgId": "af854a3a-2127-422b-91ae-364da2661108",
          "shortName": "CVE"
        },
        "references": [
          {
            "url": "http://www.openwall.com/lists/oss-security/2026/03/18/12"
          }
        ],
        "title": "CVE Program Container"
      },
      {
        "metrics": [
          {
            "other": {
              "content": {
                "id": "CVE-2026-31973",
                "options": [
                  {
                    "Exploitation": "none"
                  },
                  {
                    "Automatable": "no"
                  },
                  {
                    "Technical Impact": "partial"
                  }
                ],
                "role": "CISA Coordinator",
                "timestamp": "2026-03-19T16:14:49.923184Z",
                "version": "2.0.3"
              },
              "type": "ssvc"
            }
          }
        ],
        "providerMetadata": {
          "dateUpdated": "2026-03-19T16:14:59.386Z",
          "orgId": "134c704f-9b21-4f2e-91b3-4a467353bcc0",
          "shortName": "CISA-ADP"
        },
        "title": "CISA ADP Vulnrichment"
      }
    ],
    "cna": {
      "affected": [
        {
          "product": "samtools",
          "vendor": "samtools",
          "versions": [
            {
              "status": "affected",
              "version": "\u003e= 1.17, \u003c 1.21.1"
            },
            {
              "status": "affected",
              "version": "\u003e= 1.22, \u003c 1.22.2"
            },
            {
              "status": "affected",
              "version": "= 1.23"
            }
          ]
        }
      ],
      "descriptions": [
        {
          "lang": "en",
          "value": "SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue."
        }
      ],
      "metrics": [
        {
          "cvssV4_0": {
            "attackComplexity": "LOW",
            "attackRequirements": "NONE",
            "attackVector": "NETWORK",
            "baseScore": 6.9,
            "baseSeverity": "MEDIUM",
            "privilegesRequired": "NONE",
            "subAvailabilityImpact": "NONE",
            "subConfidentialityImpact": "NONE",
            "subIntegrityImpact": "NONE",
            "userInteraction": "NONE",
            "vectorString": "CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N",
            "version": "4.0",
            "vulnAvailabilityImpact": "LOW",
            "vulnConfidentialityImpact": "NONE",
            "vulnIntegrityImpact": "LOW"
          }
        }
      ],
      "problemTypes": [
        {
          "descriptions": [
            {
              "cweId": "CWE-476",
              "description": "CWE-476: NULL Pointer Dereference",
              "lang": "en",
              "type": "CWE"
            }
          ]
        }
      ],
      "providerMetadata": {
        "dateUpdated": "2026-03-18T20:34:00.846Z",
        "orgId": "a0819718-46f1-4df5-94e2-005712e83aaa",
        "shortName": "GitHub_M"
      },
      "references": [
        {
          "name": "https://github.com/samtools/samtools/security/advisories/GHSA-x86f-q6fj-cm43",
          "tags": [
            "x_refsource_CONFIRM"
          ],
          "url": "https://github.com/samtools/samtools/security/advisories/GHSA-x86f-q6fj-cm43"
        },
        {
          "name": "https://github.com/samtools/samtools/commit/06fc2a219b3d7c94d3f412c09f6d1efd51199f2f",
          "tags": [
            "x_refsource_MISC"
          ],
          "url": "https://github.com/samtools/samtools/commit/06fc2a219b3d7c94d3f412c09f6d1efd51199f2f"
        }
      ],
      "source": {
        "advisory": "GHSA-x86f-q6fj-cm43",
        "discovery": "UNKNOWN"
      },
      "title": "NULL pointer dereference in samtools cram-size"
    }
  },
  "cveMetadata": {
    "assignerOrgId": "a0819718-46f1-4df5-94e2-005712e83aaa",
    "assignerShortName": "GitHub_M",
    "cveId": "CVE-2026-31973",
    "datePublished": "2026-03-18T20:34:00.846Z",
    "dateReserved": "2026-03-10T15:40:10.486Z",
    "dateUpdated": "2026-03-19T16:14:59.386Z",
    "state": "PUBLISHED"
  },
  "dataType": "CVE_RECORD",
  "dataVersion": "5.2",
  "vulnerability-lookup:meta": {
    "epss": {
      "cve": "CVE-2026-31973",
      "date": "2026-09-30",
      "epss": "0.00616",
      "percentile": "0.47547"
    },
    "nvd": {
      "cve": {
        "affected": [
          {
            "affectedData": [
              {
                "product": "samtools",
                "vendor": "samtools",
                "versions": [
                  {
                    "status": "affected",
                    "version": "\u003e= 1.17, \u003c 1.21.1"
                  },
                  {
                    "status": "affected",
                    "version": "\u003e= 1.22, \u003c 1.22.2"
                  },
                  {
                    "status": "affected",
                    "version": "= 1.23"
                  }
                ]
              }
            ],
            "source": "security-advisories@github.com"
          }
        ],
        "configurations": [
          {
            "nodes": [
              {
                "cpeMatch": [
                  {
                    "criteria": "cpe:2.3:a:samtools:samtools:*:*:*:*:*:*:*:*",
                    "matchCriteriaId": "2AAB5401-9187-4F27-A463-B52558DE6D9D",
                    "versionEndIncluding": "1.21.1",
                    "versionStartIncluding": "1.17",
                    "vulnerable": true
                  },
                  {
                    "criteria": "cpe:2.3:a:samtools:samtools:*:*:*:*:*:*:*:*",
                    "matchCriteriaId": "AD12CAC6-5A57-435F-991C-FFA0DB2F3400",
                    "versionEndExcluding": "1.22.2",
                    "versionStartIncluding": "1.22",
                    "vulnerable": true
                  },
                  {
                    "criteria": "cpe:2.3:a:samtools:samtools:1.23:*:*:*:*:*:*:*",
                    "matchCriteriaId": "7FAB480A-76D2-4850-B9D0-4D7F9C32B8C4",
                    "vulnerable": true
                  }
                ],
                "negate": false,
                "operator": "OR"
              }
            ]
          }
        ],
        "cveTags": [],
        "descriptions": [
          {
            "lang": "en",
            "value": "SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue."
          },
          {
            "lang": "es",
            "value": "SAMtools es un programa para leer, manipular y escribir formatos de archivo bioinform\u00e1ticos. A partir de la versi\u00f3n 1.17, en el comando cram-size, utilizado para escribir informaci\u00f3n sobre qu\u00e9 tan bien se comprimen los archivos CRAM, se omiti\u00f3 una comprobaci\u00f3n para ver si \u0027cram_decode_compression_header()\u0027 estaba ausente. Si la funci\u00f3n devolv\u00eda un error, esto podr\u00eda llevar a una desreferenciaci\u00f3n de puntero NULL. Explotar este error causa una desreferenciaci\u00f3n de puntero NULL. T\u00edpicamente, esto har\u00e1 que el programa falle. Las versiones 1.23.1, 1.22.2 y 1.21.1 incluyen correcciones para este problema. No hay una soluci\u00f3n alternativa para este problema."
          }
        ],
        "id": "CVE-2026-31973",
        "lastModified": "2026-06-17T10:34:52.260",
        "metrics": {
          "cvssMetricV31": [
            {
              "cvssData": {
                "attackComplexity": "LOW",
                "attackVector": "NETWORK",
                "availabilityImpact": "HIGH",
                "baseScore": 7.5,
                "baseSeverity": "HIGH",
                "confidentialityImpact": "NONE",
                "integrityImpact": "NONE",
                "privilegesRequired": "NONE",
                "scope": "UNCHANGED",
                "userInteraction": "NONE",
                "vectorString": "CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:H",
                "version": "3.1"
              },
              "exploitabilityScore": 3.9,
              "impactScore": 3.6,
              "source": "nvd@nist.gov",
              "type": "Primary"
            }
          ],
          "cvssMetricV40": [
            {
              "cvssData": {
                "Automatable": "NOT_DEFINED",
                "Recovery": "NOT_DEFINED",
                "Safety": "NOT_DEFINED",
                "attackComplexity": "LOW",
                "attackRequirements": "NONE",
                "attackVector": "NETWORK",
                "availabilityRequirement": "NOT_DEFINED",
                "baseScore": 6.9,
                "baseSeverity": "MEDIUM",
                "confidentialityRequirement": "NOT_DEFINED",
                "exploitMaturity": "NOT_DEFINED",
                "integrityRequirement": "NOT_DEFINED",
                "modifiedAttackComplexity": "NOT_DEFINED",
                "modifiedAttackRequirements": "NOT_DEFINED",
                "modifiedAttackVector": "NOT_DEFINED",
                "modifiedPrivilegesRequired": "NOT_DEFINED",
                "modifiedSubAvailabilityImpact": "NOT_DEFINED",
                "modifiedSubConfidentialityImpact": "NOT_DEFINED",
                "modifiedSubIntegrityImpact": "NOT_DEFINED",
                "modifiedUserInteraction": "NOT_DEFINED",
                "modifiedVulnAvailabilityImpact": "NOT_DEFINED",
                "modifiedVulnConfidentialityImpact": "NOT_DEFINED",
                "modifiedVulnIntegrityImpact": "NOT_DEFINED",
                "privilegesRequired": "NONE",
                "providerUrgency": "NOT_DEFINED",
                "subAvailabilityImpact": "NONE",
                "subConfidentialityImpact": "NONE",
                "subIntegrityImpact": "NONE",
                "userInteraction": "NONE",
                "valueDensity": "NOT_DEFINED",
                "vectorString": "CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N/E:X/CR:X/IR:X/AR:X/MAV:X/MAC:X/MAT:X/MPR:X/MUI:X/MVC:X/MVI:X/MVA:X/MSC:X/MSI:X/MSA:X/S:X/AU:X/R:X/V:X/RE:X/U:X",
                "version": "4.0",
                "vulnAvailabilityImpact": "LOW",
                "vulnConfidentialityImpact": "NONE",
                "vulnIntegrityImpact": "LOW",
                "vulnerabilityResponseEffort": "NOT_DEFINED"
              },
              "source": "security-advisories@github.com",
              "type": "Secondary"
            }
          ],
          "ssvcV203": [
            {
              "source": "134c704f-9b21-4f2e-91b3-4a467353bcc0",
              "ssvcData": {
                "id": "CVE-2026-31973",
                "options": [
                  {
                    "exploitation": "none"
                  },
                  {
                    "automatable": "no"
                  },
                  {
                    "technicalImpact": "partial"
                  }
                ],
                "role": "CISA Coordinator",
                "timestamp": "2026-03-19T16:14:49.923184Z",
                "version": "2.0.3"
              }
            }
          ]
        },
        "published": "2026-03-18T21:16:26.250",
        "references": [
          {
            "source": "security-advisories@github.com",
            "tags": [
              "Patch"
            ],
            "url": "https://github.com/samtools/samtools/commit/06fc2a219b3d7c94d3f412c09f6d1efd51199f2f"
          },
          {
            "source": "security-advisories@github.com",
            "tags": [
              "Vendor Advisory"
            ],
            "url": "https://github.com/samtools/samtools/security/advisories/GHSA-x86f-q6fj-cm43"
          },
          {
            "source": "af854a3a-2127-422b-91ae-364da2661108",
            "tags": [
              "Mailing List",
              "Third Party Advisory"
            ],
            "url": "http://www.openwall.com/lists/oss-security/2026/03/18/12"
          }
        ],
        "sourceIdentifier": "security-advisories@github.com",
        "vulnStatus": "Analyzed",
        "weaknesses": [
          {
            "description": [
              {
                "lang": "en",
                "value": "CWE-476"
              }
            ],
            "source": "security-advisories@github.com",
            "type": "Secondary"
          }
        ]
      }
    },
    "redhat_vex": {
      "current_release_date": "2026-06-28T07:28:25+00:00",
      "cve": "CVE-2026-31973",
      "id": "CVE-2026-31973",
      "initial_release_date": "2026-03-18T20:34:00.846000+00:00",
      "product_status:known_not_affected": "1",
      "source": "Red Hat CSAF VEX",
      "status": "final",
      "title": "samtools: SAMtools: Denial of Service due to NULL pointer dereference in cram-size command",
      "url": "https://security.access.redhat.com/data/csaf/v2/vex/2026/cve-2026-31973.json",
      "version": "3"
    },
    "vulnrichment": {
      "containers": {
        "adp": [
          {
            "providerMetadata": {
              "dateUpdated": "2026-03-18T23:08:20.721Z",
              "orgId": "af854a3a-2127-422b-91ae-364da2661108",
              "shortName": "CVE"
            },
            "references": [
              {
                "url": "http://www.openwall.com/lists/oss-security/2026/03/18/12"
              }
            ],
            "title": "CVE Program Container"
          },
          {
            "metrics": [
              {
                "other": {
                  "content": {
                    "id": "CVE-2026-31973",
                    "options": [
                      {
                        "Exploitation": "none"
                      },
                      {
                        "Automatable": "no"
                      },
                      {
                        "Technical Impact": "partial"
                      }
                    ],
                    "role": "CISA Coordinator",
                    "timestamp": "2026-03-19T16:14:49.923184Z",
                    "version": "2.0.3"
                  },
                  "type": "ssvc"
                }
              }
            ],
            "providerMetadata": {
              "dateUpdated": "2026-03-19T16:14:55.472Z",
              "orgId": "134c704f-9b21-4f2e-91b3-4a467353bcc0",
              "shortName": "CISA-ADP"
            },
            "title": "CISA ADP Vulnrichment"
          }
        ],
        "cna": {
          "affected": [
            {
              "product": "samtools",
              "vendor": "samtools",
              "versions": [
                {
                  "status": "affected",
                  "version": "\u003e= 1.17, \u003c 1.21.1"
                },
                {
                  "status": "affected",
                  "version": "\u003e= 1.22, \u003c 1.22.2"
                },
                {
                  "status": "affected",
                  "version": "= 1.23"
                }
              ]
            }
          ],
          "descriptions": [
            {
              "lang": "en",
              "value": "SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue."
            }
          ],
          "metrics": [
            {
              "cvssV4_0": {
                "attackComplexity": "LOW",
                "attackRequirements": "NONE",
                "attackVector": "NETWORK",
                "baseScore": 6.9,
                "baseSeverity": "MEDIUM",
                "privilegesRequired": "NONE",
                "subAvailabilityImpact": "NONE",
                "subConfidentialityImpact": "NONE",
                "subIntegrityImpact": "NONE",
                "userInteraction": "NONE",
                "vectorString": "CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N",
                "version": "4.0",
                "vulnAvailabilityImpact": "LOW",
                "vulnConfidentialityImpact": "NONE",
                "vulnIntegrityImpact": "LOW"
              }
            }
          ],
          "problemTypes": [
            {
              "descriptions": [
                {
                  "cweId": "CWE-476",
                  "description": "CWE-476: NULL Pointer Dereference",
                  "lang": "en",
                  "type": "CWE"
                }
              ]
            }
          ],
          "providerMetadata": {
            "dateUpdated": "2026-03-18T20:34:00.846Z",
            "orgId": "a0819718-46f1-4df5-94e2-005712e83aaa",
            "shortName": "GitHub_M"
          },
          "references": [
            {
              "name": "https://github.com/samtools/samtools/security/advisories/GHSA-x86f-q6fj-cm43",
              "tags": [
                "x_refsource_CONFIRM"
              ],
              "url": "https://github.com/samtools/samtools/security/advisories/GHSA-x86f-q6fj-cm43"
            },
            {
              "name": "https://github.com/samtools/samtools/commit/06fc2a219b3d7c94d3f412c09f6d1efd51199f2f",
              "tags": [
                "x_refsource_MISC"
              ],
              "url": "https://github.com/samtools/samtools/commit/06fc2a219b3d7c94d3f412c09f6d1efd51199f2f"
            }
          ],
          "source": {
            "advisory": "GHSA-x86f-q6fj-cm43",
            "discovery": "UNKNOWN"
          },
          "title": "NULL pointer dereference in samtools cram-size"
        }
      },
      "cveMetadata": {
        "assignerOrgId": "a0819718-46f1-4df5-94e2-005712e83aaa",
        "assignerShortName": "GitHub_M",
        "cveId": "CVE-2026-31973",
        "datePublished": "2026-03-18T20:34:00.846Z",
        "dateReserved": "2026-03-10T15:40:10.486Z",
        "dateUpdated": "2026-03-19T16:14:59.386Z",
        "state": "PUBLISHED"
      },
      "dataType": "CVE_RECORD",
      "dataVersion": "5.2"
    }
  }
}



Log in or create an account to share your comment.




Tags
Taxonomy of the tags.


Loading…

Loading…

Loading…

Forecast uses a logistic model when the trend is rising, or an exponential decay model when the trend is falling. Fitted via linearized least squares.

Sightings

Author Source Type Date Other

Nomenclature

  • Seen: The vulnerability was mentioned, discussed, or observed by the user.
  • Confirmed: The vulnerability has been validated from an analyst's perspective.
  • Published Proof of Concept: A public proof of concept is available for this vulnerability.
  • Exploited: The vulnerability was observed as exploited by the user who reported the sighting.
  • Patched: The vulnerability was observed as successfully patched by the user who reported the sighting.
  • Not exploited: The vulnerability was not observed as exploited by the user who reported the sighting.
  • Not confirmed: The user expressed doubt about the validity of the vulnerability.
  • Not patched: The vulnerability was not observed as successfully patched by the user who reported the sighting.

Loading…

Loading…

Loading…

Related by attack behaviour

Vulnerabilities whose description is nearest to this one in the vector space of the CIRCL/vulnerability-attack-technique-biencoder model. This is a similarity search over the bi-encoder space (plain cosine), not a classification, and it has no measured accuracy.


Loading…