FKIE_CVE-2026-31964
Vulnerability from fkie_nvd - Published: 2026-03-18 19:16 - Updated: 2026-03-19 14:50
Severity ?
Summary
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in certain cases to save space. Due to some quirks of the CRAM format, it is necessary to handle these records carefully as they will actually store data that needs to be consumed and then discarded. Unfortunately the `CONST`, `XPACK` and `XRLE` encodings did not properly implement the interface needed to do this. Trying to decode records with omitted sequence or quality data using these encodings would result in an attempt to write to a NULL pointer. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
References
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"value": "HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in certain cases to save space. Due to some quirks of the CRAM format, it is necessary to handle these records carefully as they will actually store data that needs to be consumed and then discarded. Unfortunately the `CONST`, `XPACK` and `XRLE` encodings did not properly implement the interface needed to do this. Trying to decode records with omitted sequence or quality data using these encodings would result in an attempt to write to a NULL pointer. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue."
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"value": "HTSlib es una biblioteca para leer y escribir formatos de archivo bioinform\u00e1ticos. CRAM es un formato comprimido que almacena datos de alineaci\u00f3n de secuencias de ADN utilizando una variedad de codificaciones y m\u00e9todos de compresi\u00f3n. Aunque la mayor\u00eda de los registros de alineaci\u00f3n almacenan valores de secuencia de ADN y de calidad, el formato tambi\u00e9n permite omitir estos datos en ciertos casos para ahorrar espacio. Debido a algunas peculiaridades del formato CRAM, es necesario manejar estos registros con cuidado, ya que en realidad almacenar\u00e1n datos que deben ser consumidos y luego descartados. Desafortunadamente, las codificaciones CONST, XPACK y XRLE no implementaron correctamente la interfaz necesaria para hacer esto. Intentar decodificar registros con datos de secuencia o calidad omitidos utilizando estas codificaciones resultar\u00eda en un intento de escribir en un puntero NULL. Explotar este error causa una desreferencia de puntero NULL. T\u00edpicamente, esto har\u00e1 que el programa falle. Las versiones 1.23.1, 1.22.2 y 1.21.1 incluyen correcciones para este problema. No hay una soluci\u00f3n alternativa para este problema."
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"id": "CVE-2026-31964",
"lastModified": "2026-03-19T14:50:24.563",
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Sightings
| Author | Source | Type | Date |
|---|
Nomenclature
- Seen: The vulnerability was mentioned, discussed, or observed by the user.
- Confirmed: The vulnerability has been validated from an analyst's perspective.
- Published Proof of Concept: A public proof of concept is available for this vulnerability.
- Exploited: The vulnerability was observed as exploited by the user who reported the sighting.
- Patched: The vulnerability was observed as successfully patched by the user who reported the sighting.
- Not exploited: The vulnerability was not observed as exploited by the user who reported the sighting.
- Not confirmed: The user expressed doubt about the validity of the vulnerability.
- Not patched: The vulnerability was not observed as successfully patched by the user who reported the sighting.
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